> For the complete documentation index, see [llms.txt](https://guides.tjhsst.edu/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://guides.tjhsst.edu/research.md).

# Research

- [Mathematica](https://guides.tjhsst.edu/research/mathematica.md): This page describes how to download and install Mathematica for TJHSST students.
- [Matlab](https://guides.tjhsst.edu/research/matlab.md): This page describes how to download and install Matlab for TJHSST students
- [Cluster Introduction](https://guides.tjhsst.edu/research/cluster-introduction.md)
- [Slurm](https://guides.tjhsst.edu/research/using-infoprism.md): This document describes how to properly use the CSL's 53-node computer cluster
- [Migrating from JupyterHub to OnDemand](https://guides.tjhsst.edu/research/migrating-from-jupyterhub-to-ondemand.md): This page details the changes between JupyterHub and Open OnDemand
- [Open OnDemand](https://guides.tjhsst.edu/research/ondemand.md): This document describes how to use TJ's Open OnDemand instance
- [QIIME2](https://guides.tjhsst.edu/research/ondemand/qiime2.md): This document describes how to use qiime2 and other biology packages on JupyterHub and the Cluster
- [Visual Studio Code (VS Code)](https://guides.tjhsst.edu/research/ondemand/visual-studio-code-vs-code.md): Some Frequently Asked Questions (FAQs) about the VS Code offered on OnDemand
- [Zoidberg](https://guides.tjhsst.edu/research/using-zoidberg.md)
- [tmux](https://guides.tjhsst.edu/research/tmux.md): How and why you should use tmux to run your jobs.